fixing documentation thingy

CMakeLists.txt

@@ -5,12 +5,9 @@ execute_process(COMMAND ./ver.sh OUTPUT_VARIABLE GIT_COMMIT OUTPUT_STRIP_TRAILIN
 set(CMAKE_PROJECT_VERSION_TWEAK ${GIT_COMMIT})
 set(CMAKE_PROJECT_VERSION_TWEAK ${GIT_COMMIT})
 set(PROJECT_VERSION_TWEAK ${GIT_COMMIT})
 set(PROJECT_VERSION_TWEAK ${GIT_COMMIT})
 set(Nitrogen_VERSION_TWEAK ${GIT_COMMIT})
 set(Nitrogen_VERSION_TWEAK ${GIT_COMMIT})
-<<<<<<< HEAD
 
 
 configure_file(Doxyfile.in Doxyfile)
 configure_file(Doxyfile.in Doxyfile)
 execute_process(COMMAND doxygen ${CMAKE_BINARY_DIR}/Doxyfile WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
 execute_process(COMMAND doxygen ${CMAKE_BINARY_DIR}/Doxyfile WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
-=======
->>>>>>> be9c14e16a3d4dadc0602a50386ba5b6cbaaed53
 
 
 set(CMAKE_CXX_STANDARD 14)
 set(CMAKE_CXX_STANDARD 14)
 set(CMAKE_C_STANDARD 11)
 set(CMAKE_C_STANDARD 11)

Doxyfile.in

@@ -171,9 +171,10 @@ STRIP_FROM_PATH        =
 # specify the list of include paths that are normally passed to the compiler
 # specify the list of include paths that are normally passed to the compiler
 # using the -I flag.
 # using the -I flag.
 
 
-STRIP_FROM_INC_PATH    = src/libnde \
-                         src/libntk \
-                         src/NitroWin
+STRIP_FROM_INC_PATH    = src/nde \
+                         src/ntk \
+                         src/NitroWin \
+						 @CMAKE_CURRENT_BINARY_DIR@
 
 
 # If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter (but
 # If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter (but
 # less readable) file names. This can be useful is your file systems doesn't
 # less readable) file names. This can be useful is your file systems doesn't
@@ -313,7 +314,7 @@ MARKDOWN_SUPPORT       = YES
 # Minimum value: 0, maximum value: 99, default value: 0.
 # Minimum value: 0, maximum value: 99, default value: 0.
 # This tag requires that the tag MARKDOWN_SUPPORT is set to YES.
 # This tag requires that the tag MARKDOWN_SUPPORT is set to YES.
 
 
-TOC_INCLUDE_HEADINGS   = 0
+TOC_INCLUDE_HEADINGS   = 3
 
 
 # When enabled doxygen tries to link words that correspond to documented
 # When enabled doxygen tries to link words that correspond to documented
 # classes, or namespaces to their corresponding documentation. Such a link can
 # classes, or namespaces to their corresponding documentation. Such a link can
@@ -793,9 +794,7 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.
 # Note: If this tag is empty the current directory is searched.
 
 
-INPUT                  = src/libnde \
-                         src/libntk \
-                         src/NitroWin
+INPUT                  = 
 
 
 # This tag can be used to specify the character encoding of the source files
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -838,7 +837,7 @@ RECURSIVE              = YES
 # Note that relative paths are relative to the directory from which doxygen is
 # Note that relative paths are relative to the directory from which doxygen is
 # run.
 # run.
 
 
-EXCLUDE                = 
+EXCLUDE                = deps
 
 
 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # directories that are symbolic links (a Unix file system feature) are excluded
 # directories that are symbolic links (a Unix file system feature) are excluded